Pull singularity rserver docker
Pull singularity rserver docker
Note latest does not work
cd
mkdir singularity-images;
cd singularity-images
module load singularity
# singularity pull --name rstudio.simg docker://rocker/tidyverse:latest
# singularity pull --name rstudio4.simg docker://rocker/tidyverse:4.0.0
singularity pull --name rstudio.mcw shub://mcw-rcc/rstudio-server
singularity pull --name rstudio4.simg docker://rocker/rstudio:latest
singularity pull --name rstudio3.6.2.simg docker://rocker/tidyverse:3.6.2
singularity pull --name rstudio3.6.tommy.simg docker://crazyhottommy/rocker-with-jpeg:3.6.3
# singularity exec rstudio.simg rserver --www-address=127.0.0.1
singularity exec --bind /homes,/cm,/liulab/asahu,/liulab/asahu/rserver/var:/var rstudio4.simg rserver --www-address=127.0.0.1
singularity exec --bind /liulab/asahu rstudio3.6.2.simg rserver --www-address=127.0.0.1
singularity exec --bind /tcga,/liulab,/homes:/avi,/cm,/homes6 rstudio3.6.tommy.simg rserver --www-address=127.0.0.1 &
PASSWORD='asdf' singularity exec --bind=/liulab/asahu singularity-rstudio.simg rserver --auth-none=0 --auth-pam-helper-path=pam-helper --www-address=127.0.0.1 &
PASSWORD='asdf' singularity exec --bind /liulab/asahu,/cm,/homes6 rstudio3.6.2.simg rserver --auth-none=0 --auth-pam-helper-path=pam-helper --www-address=127.0.0.1 &
SSH tuneling
ssh -f -L 51812:localhost:51812 $KRAKEN ssh -L 51812:localhost:8787 -N node16
# ssh -Y -L 51812:localhost:51812 $KRAKEN
Login @ localhost:59083
Killing ssh tunneling
sudo killall ssh
``` c(“/liulab/asahu/softwares/kraken/R_lib”, “/homes/asahu/R/x86_64-pc-linux-gnu-library/4.0”, “/cm/shared/lib/R/4.0.0/site-library”, “/cm/shared/apps/R/4.0.0/lib64/R/library”)